STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zmat5Zinc finger matrin-type protein 5 isoform X1. (206 aa)    
Predicted Functional Partners:
ruxe
Small nuclear ribonucleoprotein E.
   
 0.978
ruxe-2
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.978
LOC106563120
Small nuclear ribonucleoprotein Sm D3.
   
 0.977
LOC106585463
Small nuclear ribonucleoprotein Sm D3.
   
 0.976
ruxg
Small nuclear ribonucleoprotein G.
   
 0.974
ENSSSAP00000083996
Small nuclear ribonucleoprotein polypeptide G.
   
 0.974
rnpc3
RNA-binding protein 40 isoform X3.
   
 0.968
LOC106586372
Splicing factor 3B subunit 1 isoform X1.
   
 0.966
LOC100380860
Splicing factor 3B subunit 1 isoform X1.
   
 0.966
LOC106581107
Small nuclear ribonucleoprotein Sm D2.
   
 0.964
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.