STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cssa10h12orf29Uncharacterized protein C12orf29 homolog. (325 aa)    
Predicted Functional Partners:
tmtc3
Transmembrane and TPR repeat-containing protein 3.
   
  
 0.514
TMTC3
Transmembrane O-mannosyltransferase targeting cadherins 3.
   
  
 0.514
zc3h11a
Zinc finger CCCH domain-containing protein 11A.
      
 0.489
LOC106583515
Zinc finger CCCH domain-containing protein 11A-like isoform X2.
      
 0.489
ENSSSAP00000020650
Zinc finger protein 644b.
      
 0.457
LOC106560308
Zinc finger protein 644-like.
      
 0.457
LOC106568986
Zinc finger protein 644-like isoform X3.
      
 0.457
ENSSSAP00000086496
Zinc finger protein 644-like.
      
 0.457
LOC106598905
Zinc finger protein 644-like.
      
 0.457
fytd1
UAP56-interacting factor; Required for mRNA export from the nucleus to the cytoplasm. Acts as an adapter that uses the ddx39b/uap56-nfx1 pathway to ensure efficient mRNA export and delivering to the nuclear pore (By similarity); Belongs to the UIF family.
      
 0.449
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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