LOC106564304 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106564304

Calcineurin B homologous protein 3-like. (245 aa)

Predicted Functional Partners:

pp2bc

0.734

LOC106563625

0.734

LOC106604405

0.734

PPP3CA

0.734

PPP3CA-2

0.734

LOC106612112

0.734

LOC106585124

0.734

LOC106568136

0.734

LOC106580517

0.734

LOC106603034

0.734

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106563625	LOC106564304	ENSSSAP00000015783	ENSSSAP00000010991	Endothelial cell-specific chemotaxis regulator-like.	Calcineurin B homologous protein 3-like.	0.734
LOC106564304	LOC106563625	ENSSSAP00000010991	ENSSSAP00000015783	Calcineurin B homologous protein 3-like.	Endothelial cell-specific chemotaxis regulator-like.	0.734
LOC106564304	LOC106568136	ENSSSAP00000010991	ENSSSAP00000114636	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase.	0.734
LOC106564304	LOC106580517	ENSSSAP00000010991	ENSSSAP00000117099	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase.	0.734
LOC106564304	LOC106585124	ENSSSAP00000010991	ENSSSAP00000111266	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform-like.	0.734
LOC106564304	LOC106603034	ENSSSAP00000010991	ENSSSAP00000118309	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase.	0.734
LOC106564304	LOC106604405	ENSSSAP00000010991	ENSSSAP00000047102	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase.	0.734
LOC106564304	LOC106612112	ENSSSAP00000010991	ENSSSAP00000089761	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase.	0.734
LOC106564304	PPP3CA	ENSSSAP00000010991	ENSSSAP00000062708	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform.	0.734
LOC106564304	PPP3CA-2	ENSSSAP00000010991	ENSSSAP00000063097	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase.	0.734
LOC106564304	pp2bc	ENSSSAP00000010991	ENSSSAP00000006211	Calcineurin B homologous protein 3-like.	Serine/threonine-protein phosphatase.	0.734
LOC106568136	LOC106564304	ENSSSAP00000114636	ENSSSAP00000010991	Serine/threonine-protein phosphatase.	Calcineurin B homologous protein 3-like.	0.734
LOC106580517	LOC106564304	ENSSSAP00000117099	ENSSSAP00000010991	Serine/threonine-protein phosphatase.	Calcineurin B homologous protein 3-like.	0.734
LOC106585124	LOC106564304	ENSSSAP00000111266	ENSSSAP00000010991	Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform-like.	Calcineurin B homologous protein 3-like.	0.734
LOC106603034	LOC106564304	ENSSSAP00000118309	ENSSSAP00000010991	Serine/threonine-protein phosphatase.	Calcineurin B homologous protein 3-like.	0.734
LOC106604405	LOC106564304	ENSSSAP00000047102	ENSSSAP00000010991	Serine/threonine-protein phosphatase.	Calcineurin B homologous protein 3-like.	0.734
LOC106612112	LOC106564304	ENSSSAP00000089761	ENSSSAP00000010991	Serine/threonine-protein phosphatase.	Calcineurin B homologous protein 3-like.	0.734
PPP3CA	LOC106564304	ENSSSAP00000062708	ENSSSAP00000010991	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform.	Calcineurin B homologous protein 3-like.	0.734
PPP3CA-2	LOC106564304	ENSSSAP00000063097	ENSSSAP00000010991	Serine/threonine-protein phosphatase.	Calcineurin B homologous protein 3-like.	0.734
pp2bc	LOC106564304	ENSSSAP00000006211	ENSSSAP00000010991	Serine/threonine-protein phosphatase.	Calcineurin B homologous protein 3-like.	0.734