STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106605797Uncharacterized protein LOC106605889 isoform X2. (620 aa)    
Predicted Functional Partners:
idi1
Isopentenyl-diphosphate Delta-isomerase 1 isoform X1.
  
 
 0.924
fdft1
Squalene synthase isoform X1.
  
 0.878
LOC106571543
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
  
 
 0.853
GGPPS
Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.848
erg19
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 0.841
LOC106562275
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 0.841
ENSSSAP00000063148
NADH:ubiquinone oxidoreductase complex assembly factor 6.
  
 0.685
LOC106581338
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6-like.
  
 0.685
LOC106590093
WD repeat-containing protein KIAA1875-like.
  
 0.685
ENSSSAP00000087094
Coenzyme Q2 4-hydroxybenzoate polyprenyltransferase.
  
 
 0.684
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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