STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clptm1Cleft lip and palate transmembrane protein 1. (660 aa)    
Predicted Functional Partners:
ddx11
Probable ATP-dependent RNA helicase DDX11 isoform X1.
    
 
 0.783
LOC106594579
Mitotic spindle assembly checkpoint protein MAD1-like.
    
 
 0.717
LOC106595452
Mitotic spindle assembly checkpoint protein MAD1-like.
    
 
 0.717
dera
Deoxyribose-phosphate aldolase isoform X1.
     
  0.708
md2l1
Mitotic spindle assembly checkpoint protein MAD2A.
    
   0.708
agxt2
Alanine--glyoxylate aminotransferase 2, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.708
LOC106577502
Mitotic spindle assembly checkpoint protein MAD2A-like.
    
   0.708
ldhd
Probable D-lactate dehydrogenase, mitochondrial isoform X1.
     
  0.708
glyctk
Glycerate kinase isoform X1.
     
  0.671
LOC106581777
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.640
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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