Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gigyf1PERQ amino acid-rich with GYF domain-containing protein 1 isoform X1. (1066 aa)    
Predicted Functional Partners:
LOC106587198
Trinucleotide repeat-containing gene 6C protein-like isoform X1.
   
 
 0.880
LOC106564661
Trinucleotide repeat-containing gene 6C protein-like isoform X1.
   
 
 0.880
LOC106608398
Eukaryotic translation initiation factor 4E type 2-like; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.867
eif4e2
Eukaryotic translation initiation factor 4E type 2 isoform X1; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.867
LOC106591161
LOW QUALITY PROTEIN: DIS3-like exonuclease 1.
   
 
 0.790
ENSSSAP00000042359
annotation not available
    
 
 0.749
LOC106561350
CCR4-NOT transcription complex subunit 1-like isoform X11.
   
 
 0.735
ENSSSAP00000080004
CCR4-NOT transcription complex, subunit 1.
   
 
 0.735
LOC106605696
Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family.
    
 
 0.725
LOC106577487
Probable ATP-dependent RNA helicase ddx6; Belongs to the DEAD box helicase family.
    
 
 0.725
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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