STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603492CCR4-NOT transcription complex subunit 7 isoform X2. (300 aa)    
Predicted Functional Partners:
LOC106561350
CCR4-NOT transcription complex subunit 1-like isoform X11.
   
 0.991
LOC106609840
CCR4-NOT transcription complex subunit 4-like.
    
 0.986
cnot9
Cell differentiation protein RCD1 homolog isoform X1.
   
 0.986
LOC106575212
Cell differentiation protein RCD1 homolog isoform X1.
   
 0.986
ENSSSAP00000080004
CCR4-NOT transcription complex, subunit 1.
   
 0.986
CNOT4
CCR4-NOT transcription complex subunit 4-like isoform X1.
    
 0.986
LOC106574282
Cell differentiation protein RCD1 homolog isoform X2.
   
 0.986
LOC106561643
CCR4-NOT transcription complex subunit 4-like isoform X2.
    
 0.986
cnot3
LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 3.
    
 0.981
LOC106588450
CCR4-NOT transcription complex subunit 3-like isoform X3.
    
 0.981
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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