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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106612721Biogenesis of lysosome-related organelles complex 1 subunit 3-like. (213 aa)    
Predicted Functional Partners:
LOC106566155
Biogenesis of lysosome-related organelles complex 1 subunit 1.
    
 0.930
bloc1s1
Lysosome-related ORGANELLE complex-1 subunit 1.
    
 0.930
LOC106570184
Dysbindin-like isoform X1.
    
 0.915
LOC106588583
Dysbindin-like isoform X4.
    
 0.915
ENSSSAP00000035499
annotation not available
    
 0.893
ENSSSAP00000087359
annotation not available
    
 0.893
LOC106562462
Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. May play a role in intracellular vesicle trafficking, particular [...]
    
 0.893
LOC106570231
Biogenesis of lysosome-related organelles complex 1 subunit 4-like.
    
 0.812
LOC106588585
Biogenesis of lysosome-related organelles complex 1 subunit 4-like.
    
 0.812
snapin
SNARE-associated protein Snapin.
    
 0.712
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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