STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDGFHepatoma-derived growth factor-like. (230 aa)    
Predicted Functional Partners:
LOC106601005
Cyclin-dependent kinase 12-like isoform X2.
    
 
 0.601
LOC106607271
Cyclin-dependent kinase 12-like.
    
 
 0.601
LOC106590203
Cyclin-dependent kinase 13-like.
    
 
 0.601
LOC106578728
Cyclin-dependent kinase 13-like.
    
 
 0.601
ptn
Pleiotrophin isoform X1.
   
  
 0.569
LOC106609498
Pleiotrophin-like.
   
  
 0.569
PTA1
Pleiotrophic factor-alpha-1 precursor.
      
 0.481
ENSSSAP00000075740
Midkine b.
      
 0.481
rfc4
Replication factor C subunit 4 isoform X1.
   
 
 0.469
LOC106587109
Pleiotrophic factor-alpha-2.
      
 0.449
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.