Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HDGFHepatoma-derived growth factor-like. (230 aa)    
Predicted Functional Partners:
LOC106613807
Hepatoma-derived growth factor-related protein 2.
   
 
 0.749
LOC106584403
Hepatoma-derived growth factor-related protein 2-like.
   
 
 0.749
LOC106602302
PC4 and SFRS1-interacting protein-like.
    
   0.636
ENSSSAP00000010217
annotation not available
    
   0.636
PSIP1
Lens epithelium-derived growth factor.
    
   0.636
PSIP1-2
Lens epithelium-derived growth factor-like isoform X1.
    
   0.636
if2b
Eukaryotic translation initiation factor 2 subunit 2.
   
   0.598
LOC106582627
Eukaryotic translation initiation factor 2 subunit 2-like.
   
   0.598
LOC106565058
Eukaryotic translation initiation factor 2 subunit 2-like.
   
   0.598
rfc4
Replication factor C subunit 4 isoform X1.
   
 
 0.580
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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