STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100380764Protein YIF1B isoform X1. (338 aa)    
Predicted Functional Partners:
YIPF4
Protein YIPF.
   
 
 0.768
LOC106567491
Protein YIPF.
   
 
 0.728
ENSSSAP00000011311
annotation not available
   
 
 0.722
yipf5
Protein YIPF.
   
 
 0.722
LOC106600306
LOW QUALITY PROTEIN: protein YIPF7-like.
   
 
 0.722
RABAC1
PRA1 family protein.
   
 
 0.722
sels
Selenoprotein S-like.
   
 
 0.722
LOC106583328
PRA1 family protein.
   
 
 0.722
LOC106603860
Protein YIPF.
   
 
 0.722
MAEA
Macrophage erythroblast attacher.
   
 
 0.649
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.