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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106564139Cdc42-interacting protein 4 homolog. (380 aa)    
Predicted Functional Partners:
LOC106611341
Intersectin-2-like.
   
 0.864
ENSSSAP00000067020
Intersectin 2b.
   
 0.864
tsen2
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.835
LOC100286499
Intersectin-1 isoform X5.
   
 0.793
LOC106574310
Intersectin-1-like isoform X8.
   
 0.793
LOC106583318
Cell surface glycoprotein 1-like isoform X1.
   
 0.763
ENSSSAP00000061644
annotation not available
   
 0.705
LOC106609199
Neural Wiskott-Aldrich syndrome protein-like isoform X1.
   
 0.705
LOC106572383
wiskott-Aldrich syndrome protein homolog.
   
 0.705
LOC106567248
Wiskott-Aldrich syndrome protein homolog.
   
 0.705
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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