STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106593878Homeobox protein OTX2. (290 aa)    
Predicted Functional Partners:
LOC106606198
cAMP-dependent protein kinase type I-alpha regulatory subunit-like isoform X1.
      
 0.626
slc38a6
Probable sodium-coupled neutral amino acid transporter 6.
      
 0.623
LOC106566001
Hepatocyte growth factor-like protein isoform X2; Belongs to the peptidase S1 family. Plasminogen subfamily.
      
 0.622
RD3L
Protein RD3-like.
      
 0.622
LOC106582772
Hepatocyte growth factor-like protein; Belongs to the peptidase S1 family. Plasminogen subfamily.
      
 0.622
rtn1
Reticulon.
      
 0.499
RTN1
Reticulon.
      
 0.499
tead3
Transcriptional enhancer factor TEF-5 isoform X1.
      
 0.497
NR2E3
Photoreceptor-specific nuclear receptor-like.
   
 
 0.464
LOC106586651
Nuclear receptor subfamily 1 group I member 2-like isoform X3.
    
 
 0.448
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.