Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC106602734Inactive ubiquitin carboxyl-terminal hydrolase 53-like isoform X1. (1130 aa)    
Predicted Functional Partners:
LOC100194654
Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.
    
  0.585
LOC106577118
ubiquitin-40S ribosomal protein S27a.
    
  0.585
LOC106562992
polyubiquitin-B.
    
   0.553
cssa22h1orf74
UPF0739 protein C1orf74 homolog; Belongs to the UPF0739 family.
      
 0.534
psmb1
Proteasome subunit beta.
    
   0.532
PSMB1
Proteasome subunit beta.
    
   0.532
mphosph6
M-phase phosphoprotein 6.
     
  0.495
LOC106601000
Telethonin-like.
   
 
 0.484
LOC106607269
Telethonin-like.
   
 
 0.484
LOC106563918
Nuclear pore complex protein Nup155-like isoform X1.
      
 0.450
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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