Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106593970Transmembrane protein 260-like isoform X1. (688 aa)    
Predicted Functional Partners:
heatr4
HEAT repeat-containing protein 4.
      
 0.724
ENSSSAP00000076832
annotation not available
      
 0.669
aurkaip1
Aurora kinase A-interacting protein.
      
 0.669
ENSSSAP00000040392
Transmembrane O-mannosyltransferase targeting cadherins 1.
      
 0.556
LOC106576167
Transmembrane and TPR repeat-containing protein 1-like isoform X1.
      
 0.556
LOC106565756
Macrophage-stimulating protein receptor-like.
      
 0.535
LOC106582868
Macrophage-stimulating protein receptor-like.
      
 0.535
alkbh8
Alkylated DNA repair protein alkB homolog 8 isoform X1.
      
 0.533
LOC106573851
Non-homologous end-joining factor 1-like isoform X1.
      
 0.465
LOC106563646
Cell surface glycoprotein 1-like isoform X1.
      
 0.460
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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