STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106604490F-box/LRR-repeat protein 12-like. (401 aa)    
Predicted Functional Partners:
SKP1
S-phase kinase associated protein 1.
   
 0.900
SKP1-2
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.900
LOC106599302
Cullin-1; Belongs to the cullin family.
    
 0.832
LOC106569218
Cullin-1-like; Belongs to the cullin family.
    
 0.832
CUL1
Cullin-1-like; Belongs to the cullin family.
    
 0.832
rbx1
RING-box protein 1; E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase (CRLs) complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. CRLs complexes and arih1 collaborate in tandem to mediate ubiquitination of target proteins, arih1 mediating addition of the first ubiquitin on CRLs targets. The functional specificity of the E3 ubiquitin-protein ligase complexes d [...]
    
 0.763
ENSSSAP00000071155
annotation not available
    
 0.763
rbx1-2
Salmo salar ring-box 1 (rbx1), mRNA.
    
 0.763
LOC106612448
Cullin-3-like.
    
 0.726
LOC106600593
Cullin-3-like; Belongs to the cullin family.
    
 0.726
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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