STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdr39u1Myomesin 2-like. (302 aa)    
Predicted Functional Partners:
LOC106584865
Stomatin-like protein 1.
  
  
 0.649
hsdl2
Hydroxysteroid dehydrogenase-like protein 2 isoform X1.
  
  
 0.640
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.614
xylb
Xylulose kinase isoform X1.
      
 0.599
LOC106613668
Nicalin-1-like isoform X1.
      
 0.598
LOC106573831
Nicalin-1 isoform X1.
      
 0.598
tubgcp6
Gamma-tubulin complex component 6 isoform X1.
      
 0.593
LOC106565507
Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.
      
 0.587
LOC106601569
Syntaxin-binding protein 6-like isoform X2.
      
 0.586
LOC106611118
Syntaxin-binding protein 6-like isoform X1.
      
 0.586
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.