STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBL5Ubiquitin like 5. (101 aa)    
Predicted Functional Partners:
mfap1
Microfibrillar-associated protein 1.
    
 0.988
prpf38a
pre-mRNA processing factor 38A.
    
 0.979
pr38a
Pre-mRNA-splicing factor 38A.
    
 0.979
zmat2
Zinc finger matrin-type protein 2.
    
 0.971
LOC106563485
U4/U6.U5 tri-snRNP-associated protein 1-like.
    
 0.965
LOC106603146
U4/U6.U5 tri-snRNP-associated protein 1-like.
    
 0.965
LOC106570226
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  0.919
LOC106570228
Thioredoxin-like protein 4A.
   
  0.919
LOC100380699
pre-mRNA-processing-splicing factor 8.
    
 
 0.918
LOC106612861
pre-mRNA-processing-splicing factor 8-like.
    
 
 0.918
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.