STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106608832Tetratricopeptide repeat protein 5-like isoform X1. (471 aa)    
Predicted Functional Partners:
rpl18
60S ribosomal protein L18.
   
 
 0.911
EPRS1
Bifunctional glutamate/proline--tRNA ligase-like.
  
 
 0.904
LOC106561878
Bifunctional glutamate/proline--tRNA ligase-like isoform X1.
  
 
 0.904
RL23A
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.896
ENSSSAP00000075673
annotation not available
   
 
 0.896
RL35A
60S ribosomal protein L35a.
   
   0.894
RPL9
60S ribosomal protein L9.
   
 
 0.887
ENSSSAP00000065403
Ribosomal protein L9.
   
 
 0.887
itpa
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes the non-canonical purine nucleotides inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) as well as 2'-deoxy-N-6-hydroxylaminopurine triposphate (dHAPTP) and xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family.
   
 
 0.886
rl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.881
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.