STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnb1ip1E3 ubiquitin-protein ligase CCNB1IP1. (260 aa)    
Predicted Functional Partners:
rnf212
Probable E3 SUMO-protein ligase RNF212 isoform X1.
   
  
 0.650
mlh3
DNA mismatch repair protein Mlh3 isoform X2.
   
  
 0.623
mus81
Crossover junction endonuclease MUS81.
   
  
 0.609
mlh1
DNA mismatch repair protein Mlh1.
   
  
 0.609
ENSSSAP00000011757
annotation not available
      
 0.601
msh4
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.601
ENSSSAP00000042990
annotation not available
      
 0.601
tex11
Testis-expressed sequence 11 protein isoform X4.
      
 0.601
msh2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.601
rnf212b
RING finger protein 212B isoform X3.
      
 0.593
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.