STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603490Gem-associated protein 5-like. (1492 aa)    
Predicted Functional Partners:
ddx20
Probable ATP-dependent RNA helicase DDX20.
   
 0.999
LOC106580157
Survival motor neuron protein 1-like.
   
 0.981
LOC106585806
Survival motor neuron protein 1-like.
   
 0.981
gemin7
Gem-associated protein 7 isoform X1.
    
 0.972
gemin8
Gem-associated protein 8.
    
 0.958
ENSSSAP00000091702
annotation not available
    
 0.958
LOC106612668
Gem-associated protein 4-like.
   
 0.957
LOC106580777
Gem-associated protein 4-like.
   
 0.957
ttc37
Tetratricopeptide repeat protein 37.
    
 0.949
LOC106611181
Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.
    
 0.936
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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