Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxb13abHomeobox protein HoxB13ab. (304 aa)    
Predicted Functional Partners:
LOC106560216
Homeobox protein Meis1-like.
    
 
 0.635
meis2
Homeobox protein Meis2 isoform X4.
    
 
 0.635
ENSSSAP00000016009
annotation not available
    
 
 0.635
ENSSSAP00000081953
annotation not available
    
 
 0.635
LOC106571644
Homeobox protein Meis2-like.
    
 
 0.635
LOC106566715
Sperm-associated antigen 8-like.
      
 0.567
zic1
Zinc finger protein ZIC 1.
      
 0.545
LOC100136467
Zinc finger protein ZIC 1.
      
 0.545
LOC106612609
Homeobox protein meis3-like.
    
 
 0.511
LOC106580846
Homeobox protein meis3-like.
    
 
 0.511
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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