Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cor1cCoronin; Belongs to the WD repeat coronin family. (1626 aa)    
Predicted Functional Partners:
ift80
LOW QUALITY PROTEIN: intraflagellar transport protein 80 homolog.
   
   0.622
dhfr
Dihydrofolate reductase isoform X1.
    
 0.613
ift57
Intraflagellar transport protein 57 homolog isoform X1.
    
   0.613
LOC106565113
Retinoblastoma-binding protein 5 isoform X1.
      
 0.597
LOC106583316
Sodium/potassium-transporting ATPase subunit alpha-3-like.
      
 0.589
LOC106575230
Low-density lipoprotein receptor-related protein 1B-like.
      
 0.550
LOC106613716
Ras-related protein Rab-11B-like.
      
 0.550
LOC106573575
Ras-related protein Rab-11B-like.
      
 0.550
ENSSSAP00000064368
Low density lipoprotein receptor-related protein 1Ba.
      
 0.550
LOC106568940
Ras-related protein Rab-11B-like.
      
 0.550
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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