LOC106568293 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106568293

CAP-Gly domain-containing linker protein 1-like isoform X1. (312 aa)

Predicted Functional Partners:

cenpe

0.903

mtor

0.894

LOC106593572

0.894

LOC106560671

0.850

lis1b

0.850

LOC106581047

0.850

lis1a

0.850

kif17

0.846

mare1

0.836

mapre1

0.836

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106560671	LOC106568293	ENSSSAP00000030412	ENSSSAP00000012110	Lissencephaly-1 homolog B-like.	CAP-Gly domain-containing linker protein 1-like isoform X1.	0.850
LOC106560671	LOC106581047	ENSSSAP00000030412	ENSSSAP00000087382	Lissencephaly-1 homolog B-like.	Lissencephaly-1 homolog A-like.	0.853
LOC106560671	cenpe	ENSSSAP00000030412	ENSSSAP00000097445	Lissencephaly-1 homolog B-like.	Centromere-associated protein E isoform X3; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.937
LOC106560671	kif17	ENSSSAP00000030412	ENSSSAP00000118560	Lissencephaly-1 homolog B-like.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.839
LOC106560671	lis1a	ENSSSAP00000030412	ENSSSAP00000101953	Lissencephaly-1 homolog B-like.	Lissencephaly-1 homolog A; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.853
LOC106560671	mapre1	ENSSSAP00000030412	ENSSSAP00000092595	Lissencephaly-1 homolog B-like.	Microtubule-associated protein, RP/EB family member 1.	0.862
LOC106560671	mare1	ENSSSAP00000030412	ENSSSAP00000054085	Lissencephaly-1 homolog B-like.	Microtubule-associated protein RP/EB family member 1 isoform X1.	0.862
LOC106568293	LOC106560671	ENSSSAP00000012110	ENSSSAP00000030412	CAP-Gly domain-containing linker protein 1-like isoform X1.	Lissencephaly-1 homolog B-like.	0.850
LOC106568293	LOC106581047	ENSSSAP00000012110	ENSSSAP00000087382	CAP-Gly domain-containing linker protein 1-like isoform X1.	Lissencephaly-1 homolog A-like.	0.850
LOC106568293	LOC106593572	ENSSSAP00000012110	ENSSSAP00000072329	CAP-Gly domain-containing linker protein 1-like isoform X1.	Uncharacterized protein LOC106593572 isoform X1.	0.894
LOC106568293	cenpe	ENSSSAP00000012110	ENSSSAP00000097445	CAP-Gly domain-containing linker protein 1-like isoform X1.	Centromere-associated protein E isoform X3; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.903
LOC106568293	kif17	ENSSSAP00000012110	ENSSSAP00000118560	CAP-Gly domain-containing linker protein 1-like isoform X1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.846
LOC106568293	lis1a	ENSSSAP00000012110	ENSSSAP00000101953	CAP-Gly domain-containing linker protein 1-like isoform X1.	Lissencephaly-1 homolog A; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.850
LOC106568293	lis1b	ENSSSAP00000012110	ENSSSAP00000033198	CAP-Gly domain-containing linker protein 1-like isoform X1.	Lissencephaly-1 homolog B; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family.	0.850
LOC106568293	mapre1	ENSSSAP00000012110	ENSSSAP00000092595	CAP-Gly domain-containing linker protein 1-like isoform X1.	Microtubule-associated protein, RP/EB family member 1.	0.836
LOC106568293	mare1	ENSSSAP00000012110	ENSSSAP00000054085	CAP-Gly domain-containing linker protein 1-like isoform X1.	Microtubule-associated protein RP/EB family member 1 isoform X1.	0.836
LOC106568293	mtor	ENSSSAP00000012110	ENSSSAP00000045512	CAP-Gly domain-containing linker protein 1-like isoform X1.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.894
LOC106581047	LOC106560671	ENSSSAP00000087382	ENSSSAP00000030412	Lissencephaly-1 homolog A-like.	Lissencephaly-1 homolog B-like.	0.853
LOC106581047	LOC106568293	ENSSSAP00000087382	ENSSSAP00000012110	Lissencephaly-1 homolog A-like.	CAP-Gly domain-containing linker protein 1-like isoform X1.	0.850
LOC106581047	cenpe	ENSSSAP00000087382	ENSSSAP00000097445	Lissencephaly-1 homolog A-like.	Centromere-associated protein E isoform X3; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.937