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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106602724EF-hand calcium-binding domain-containing protein 6-like. (962 aa)    
Predicted Functional Partners:
efhc2
EF-hand domain-containing family member C2 isoform X1.
    
 
 0.832
dnai1
Dynein intermediate chain 1, axonemal.
   
 0.819
ribc1
RIB43A-like with coiled-coils protein 1.
   
 
 0.780
ENSSSAP00000080796
RIB43A domain with coiled-coils 2.
   
 
 0.780
LOC106570807
Uncharacterized protein C9orf135-like isoform X1.
  
 
   0.778
efhc1
EF-hand domain-containing protein 1 isoform X1.
    
 
 0.772
ccdc65
Coiled-coil domain-containing protein 65.
   
   0.756
ENSSSAP00000025086
EF-hand calcium binding domain 1.
   
 0.745
efcab1
EF-hand calcium-binding domain-containing protein 1.
   
 0.745
armc3
Armadillo repeat-containing protein 3.
    
 
 0.744
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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