Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106572691Neurogenic differentiation factor 4-like. (382 aa)    
Predicted Functional Partners:
LOC106609474
Achaete-scute homolog 1a-like.
   
 
 0.556
LOC106576285
Achaete-scute homolog 1a.
   
 
 0.556
LOC106561315
Achaete-scute homolog 1b-like.
   
 
 0.510
ENSSSAP00000105597
Achaete-scute complex protein.
   
 
 0.510
ENSSSAP00000003710
Insulinoma-associated 1b.
   
 0.463
insm1
Insulinoma-associated protein 1.
   
 0.463
INSM1
Insulinoma-associated protein 1a-like.
   
 0.463
LOC106585661
Forkhead box protein N4-like isoform X1.
   
  
 0.442
foxn4
Forkhead box protein N4 isoform X1.
   
  
 0.442
LOC106607825
Cyclic AMP-dependent transcription factor ATF-3-like.
      
 0.437
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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