hoxb7ab protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hoxb7ab

Homeobox protein HoxB7ab. (223 aa)

Predicted Functional Partners:

hoxb6aa

0.917

hoxb6ab

0.917

hoxb6ba

0.917

LOC106589285

0.917

hoxb5aa

0.818

hoxb4aa

0.818

hoxb5

0.818

LOC106589284

0.818

hoxa7aa

0.815

hxd4a

0.766

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106589284	LOC106589285	ENSSSAP00000078841	ENSSSAP00000078833	Homeobox protein Hox-B5b-like.	Homeobox protein Hox-B6b-like.	0.839
LOC106589284	hoxa7aa	ENSSSAP00000078841	ENSSSAP00000054417	Homeobox protein Hox-B5b-like.	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	0.899
LOC106589284	hoxb6aa	ENSSSAP00000078841	ENSSSAP00000008930	Homeobox protein Hox-B5b-like.	Homeobox protein HoxB6aa.	0.839
LOC106589284	hoxb6ab	ENSSSAP00000078841	ENSSSAP00000012138	Homeobox protein Hox-B5b-like.	Homeobox protein HoxB6ab.	0.839
LOC106589284	hoxb6ba	ENSSSAP00000078841	ENSSSAP00000027161	Homeobox protein Hox-B5b-like.	Homeobox protein HoxB6ba.	0.839
LOC106589284	hoxb7ab	ENSSSAP00000078841	ENSSSAP00000012125	Homeobox protein Hox-B5b-like.	Homeobox protein HoxB7ab.	0.818
LOC106589284	hxd4a	ENSSSAP00000078841	ENSSSAP00000073975	Homeobox protein Hox-B5b-like.	Homeobox protein Hox-D4a.	0.679
LOC106589285	LOC106589284	ENSSSAP00000078833	ENSSSAP00000078841	Homeobox protein Hox-B6b-like.	Homeobox protein Hox-B5b-like.	0.839
LOC106589285	hoxa7aa	ENSSSAP00000078833	ENSSSAP00000054417	Homeobox protein Hox-B6b-like.	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	0.872
LOC106589285	hoxb4aa	ENSSSAP00000078833	ENSSSAP00000012162	Homeobox protein Hox-B6b-like.	Salmo salar homeobox protein HoxB4ab (hoxb4ab), mRNA.	0.839
LOC106589285	hoxb5	ENSSSAP00000078833	ENSSSAP00000027138	Homeobox protein Hox-B6b-like.	Homeobox protein HoxB5ba.	0.839
LOC106589285	hoxb5aa	ENSSSAP00000078833	ENSSSAP00000008902	Homeobox protein Hox-B6b-like.	Homeobox protein Hox-B5a-like.	0.839
LOC106589285	hoxb7ab	ENSSSAP00000078833	ENSSSAP00000012125	Homeobox protein Hox-B6b-like.	Homeobox protein HoxB7ab.	0.917
LOC106589285	hxd4a	ENSSSAP00000078833	ENSSSAP00000073975	Homeobox protein Hox-B6b-like.	Homeobox protein Hox-D4a.	0.735
hoxa7aa	LOC106589284	ENSSSAP00000054417	ENSSSAP00000078841	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	Homeobox protein Hox-B5b-like.	0.899
hoxa7aa	LOC106589285	ENSSSAP00000054417	ENSSSAP00000078833	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	Homeobox protein Hox-B6b-like.	0.872
hoxa7aa	hoxb4aa	ENSSSAP00000054417	ENSSSAP00000012162	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	Salmo salar homeobox protein HoxB4ab (hoxb4ab), mRNA.	0.899
hoxa7aa	hoxb5	ENSSSAP00000054417	ENSSSAP00000027138	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	Homeobox protein HoxB5ba.	0.899
hoxa7aa	hoxb5aa	ENSSSAP00000054417	ENSSSAP00000008902	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	Homeobox protein Hox-B5a-like.	0.899
hoxa7aa	hoxb6aa	ENSSSAP00000054417	ENSSSAP00000008930	Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	Homeobox protein HoxB6aa.	0.872