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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000012141annotation not available (132 aa)    
Predicted Functional Partners:
ube2l3
Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.759
LOC106612584
E3 ubiquitin-protein ligase TRIP12-like isoform X1.
   
 
 0.627
LOC106580884
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.627
LOC106606575
Baculoviral IAP repeat-containing protein 6-like isoform X14.
    
 0.593
ENSSSAP00000012232
annotation not available
    
 0.539
LOC100194654
Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.
    
 0.539
CG024
CG024 protein precursor.
    
 0.539
LOC106577118
ubiquitin-40S ribosomal protein S27a.
    
 0.539
ENSSSAP00000012485
annotation not available
  
     0.531
LOC106578683
Ubiquitin thioesterase otulin-like isoform X1.
    
 0.526
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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