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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fppsFarnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. (365 aa)    
Predicted Functional Partners:
idi1
Isopentenyl-diphosphate Delta-isomerase 1 isoform X1.
  
 
 0.997
erg19
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 0.989
LOC106562275
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 0.989
fdft1
Squalene synthase isoform X1.
  
 0.986
GGPPS
Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.984
LOC106571543
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
  
 
 0.966
LOC106605152
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.963
LOC106582847
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.963
LOC106579710
Decaprenyl-diphosphate synthase subunit 1-like; Belongs to the FPP/GGPP synthase family.
    
 0.954
LOC106590306
Decaprenyl-diphosphate synthase subunit 1-like; Belongs to the FPP/GGPP synthase family.
    
 0.954
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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