STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fppsFarnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. (365 aa)    
Predicted Functional Partners:
idi1
Isopentenyl-diphosphate Delta-isomerase 1 isoform X1.
  
 
 0.992
fdft1
Squalene synthase isoform X1.
  
 0.990
GGPPS
Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
    
 0.990
erg19
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 0.977
LOC106562275
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 0.977
LOC106571543
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
  
 
 0.969
LOC106608156
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
   
 0.916
ENSSSAP00000084469
Farnesyltransferase, CAAX box, beta.
   
 0.916
LOC106604549
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like isoform X1.
     
 0.915
LOC106611536
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like.
     
 0.915
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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