STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106568292Density-regulated protein; Belongs to the DENR family. (201 aa)    
Predicted Functional Partners:
tma20
Salmo salar Translation machinery-associated protein 20 (tma20), mRNA.
   
 
 0.965
LOC106611521
Malignant T-cell-amplified sequence.
   
 
 0.965
ccdc62
Coiled-coil domain-containing protein 62 isoform X1.
      
 0.893
eif5b
Eukaryotic translation initiation factor 5B.
   
 
 0.889
EIF5
Eukaryotic translation initiation factor 5.
   
 
 0.876
LOC106607644
Eukaryotic translation initiation factor 5-like.
   
 
 0.875
EIF5-2
Eukaryotic Translation initiation factor 5.
   
 
 0.863
LOC106564013
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
 
 0.857
LOC106579522
COP9 constitutive photomorphogenic homolog subunit 5.
   
 
 0.851
cops5
COP9 signalosome complex subunit 5.
   
 
 0.851
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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