STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106573092Periphilin-1-like isoform X1. (378 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.846
LOC106613979
Histone H2A deubiquitinase MYSM1-like.
   
 0.846
LOC106608776
E3 ubiquitin-protein ligase KEG-like.
    
 0.785
DCTN5
Dynactin subunit 5.
    
 0.728
LOC106611341
Intersectin-2-like.
    
 0.726
actr8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize (By similarity); Belongs to the actin family. ARP8 subfamily.
    
 0.726
ENSSSAP00000067020
Intersectin 2b.
    
 0.726
LOC106582592
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
   
 0.697
nme8
Thioredoxin domain-containing protein 3 isoform X2; Belongs to the NDK family.
   
 0.697
ENSSSAP00000093050
annotation not available
   
 0.697
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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