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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106608841Probable E3 ubiquitin-protein ligase ARI5 isoform X1. (264 aa)    
Predicted Functional Partners:
ube2l3
Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.759
LOC100380762
E3 ubiquitin-protein ligase AMFR.
      
 0.629
LOC106612584
E3 ubiquitin-protein ligase TRIP12-like isoform X1.
   
 
 0.627
LOC106580884
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.627
smg1
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
    
 0.618
LOC106606575
Baculoviral IAP repeat-containing protein 6-like isoform X14.
    
 0.593
il4ra
Interleukin-4 receptor alpha chain isoform X1.
    
 0.582
LOC106572481
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
     
 0.578
LOC106601396
E3 ubiquitin-protein ligase.
     
 0.570
ube2v1
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.553
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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