STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106576326Myogenic factor. (239 aa)    
Predicted Functional Partners:
tbpl1
TATA box-binding protein-like protein 1.
    
 0.831
LOC106583049
Paired box protein Pax-7-like isoform X6.
   
 
 0.799
myog
Myogenin.
  
0.765
pax7
Salmo salar paired box protein 7 (pax7), mRNA.
   
 
 0.763
mef2a
Myocyte-specific enhancer factor 2A isoform X4.
    
 0.737
fbxo25
F-box only protein 25 isoform X1.
    
 
 0.729
Fbxo32
F-box protein 32 alpha.
    
 
 0.724
tcf12
Transcription factor 12 isoform X1.
    
 0.702
ENSSSAP00000009658
annotation not available
    
 0.702
HTF4
Transcription factor 12.
    
 0.702
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.