Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106593832LOW QUALITY PROTEIN: protocadherin-17-like. (839 aa)    
Predicted Functional Partners:
snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
      
 0.777
ST3GAL1
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1-like isoform X1; Belongs to the glycosyltransferase 29 family.
      
 0.589
ST3GAL1-2
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 1-like; Belongs to the glycosyltransferase 29 family.
      
 0.589
LOC106571186
Potassium voltage-gated channel subfamily S member 3-like; Belongs to the potassium channel family.
      
 0.482
LOC106602758
Leucine-rich repeat transmembrane neuronal protein 1-like.
     
 0.430
LOC106609982
Leucine-rich repeat transmembrane neuronal protein 1-like.
     
 0.430
LOC106565329
Calcium-dependent secretion activator 1-like isoform X3.
   
  
 0.428
LOC100380688
Calcium-dependent secretion activator 1 isoform X3.
   
  
 0.428
LOC106579288
BTB/POZ domain-containing protein KCTD5-like.
    
 
 0.427
LOC106589267
BTB/POZ domain-containing protein KCTD5-like.
    
 
 0.427
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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