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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd16Ankyrin repeat domain-containing protein 16. (367 aa)    
Predicted Functional Partners:
ift52
Intraflagellar transport protein 52 homolog.
    
 0.561
klhl30
Kelch-like protein 30 isoform X1.
   
  0.557
ift57
Intraflagellar transport protein 57 homolog isoform X1.
    
 0.548
ift80
LOW QUALITY PROTEIN: intraflagellar transport protein 80 homolog.
   
 0.548
ift172
Intraflagellar transport protein 172 homolog.
    
 0.543
fbh1
F-box only protein 18 isoform X1.
      
 0.538
LOC106585468
Intraflagellar transport protein 81 homolog.
    
 0.536
ENSSSAP00000109669
annotation not available
    
 0.536
aars1
Alanyl-tRNA synthetase, cytoplasmic; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
    
 0.515
ift88
Intraflagellar transport protein 88 homolog isoform X5.
    
 0.512
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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