STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxb2abSalmo salar homeobox protein HoxB2ab (hoxb2ab), mRNA. (389 aa)    
Predicted Functional Partners:
hoxb5
Homeobox protein HoxB5ba.
   
 
0.549
hoxb4aa
Salmo salar homeobox protein HoxB4ab (hoxb4ab), mRNA.
  
 
0.489
hoxb5aa
Homeobox protein Hox-B5a-like.
  
 
0.476
pbx2
Pre-B-cell leukemia transcription factor 2.
    
 0.456
LOC106581981
pre-B-cell leukemia transcription factor 1-like.
    
 0.456
hoxb3
Homeobox protein Hox-B3 isoform X1.
   
  
0.445
LOC106589284
Homeobox protein Hox-B5b-like.
   
 
0.444
LOC106575085
Homeobox protein PKNOX1-like.
   
 0.427
pknx1
Homeobox protein PKNOX1 isoform X1.
   
 0.427
SNAI2
Zinc finger protein SNAI2-like.
   
 
 0.427
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.