STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106570098Sorting nexin-27-like isoform X2. (674 aa)    
Predicted Functional Partners:
LOC106578683
Ubiquitin thioesterase otulin-like isoform X1.
    
 
 0.934
ENSSSAP00000019032
annotation not available
   
 
 0.781
LOC106589824
Vacuolar protein sorting-associated protein 26A-like.
   
 
 0.781
vps26a
Vacuolar protein sorting-associated protein 26A.
   
 
 0.781
vps26b
Vacuolar protein sorting-associated protein 26B.
   
 
 0.661
ENSSSAP00000053501
Vacuolar protein sorting 26 homolog B, like.
   
 
 0.661
v26bb
Vacuolar protein sorting-associated protein 26B-B.
   
 
 0.661
LOC106613018
Vacuolar protein sorting-associated protein 26B-like.
   
 
 0.661
LOC106587298
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.600
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.600
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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