Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccnd1G1/S-specific cyclin-D1; Belongs to the cyclin family. (292 aa)    
Predicted Functional Partners:
LOC106565448
Cyclin-dependent kinase 4-like; Belongs to the protein kinase superfamily.
   
 0.977
CDK4
Cyclin-dependent kinase 4-like isoform X1; Belongs to the protein kinase superfamily.
   
 0.976
rb1
Retinoblastoma-associated protein.
    
 0.970
rbl1
Retinoblastoma-like protein 1 isoform X1.
    
 0.956
CDK6
Cell division protein kinase 6; Belongs to the protein kinase superfamily.
   
 0.955
cdk6
Cyclin-dependent kinase 6-like; Belongs to the protein kinase superfamily.
   
 0.955
LOC106565657
Cyclin-dependent kinase inhibitor 1-like isoform X2.
   
 0.932
LOC106583085
Cyclin-dependent kinase inhibitor 1B-like isoform X1.
   
 0.932
rbl2
Retinoblastoma-like protein 2 isoform X1.
    
 0.930
LOC106573256
Retinoblastoma-like protein 2 isoform X1.
    
 0.930
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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