STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603919Ankyrin repeat and KH domain-containing protein 1-like isoform X3. (2629 aa)    
Predicted Functional Partners:
LOC106565169
Ubiquitin carboxyl-terminal hydrolase.
    
   0.709
LOC106583439
Ubiquitin carboxyl-terminal hydrolase.
    
   0.709
recql4
ATP-dependent DNA helicase Q4.
    
   0.636
LOC106563887
Nipped-B protein.
   
    0.566
LOC106585921
Nipped-B protein.
   
    0.566
cssa12h3orf67
Uncharacterized protein C3orf67 homolog isoform X1.
      
 0.529
ENSSSAP00000039990
annotation not available
   
    0.508
cog3
Conserved oligomeric Golgi complex subunit 3.
   
    0.508
nol6
Nucleolar protein 6.
   
    0.507
LOC106584153
Ubiquitin carboxyl-terminal hydrolase.
    
   0.484
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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