STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603919Ankyrin repeat and KH domain-containing protein 1-like isoform X3. (2629 aa)    
Predicted Functional Partners:
LOC106563887
Nipped-B protein.
   
    0.576
LOC106585921
Nipped-B protein.
   
    0.576
LOC106602346
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
   
   
0.467
LOC106602358
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like.
   
    0.467
LOC106567799
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like.
   
    0.467
ENSSSAP00000102956
annotation not available
   
    0.467
LOC106603320
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like.
   
    0.467
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
    0.457
LOC106563851
Sister chromatid cohesion protein PDS5 homolog B-like.
   
    0.440
LOC106592481
Sister chromatid cohesion protein PDS5 homolog A-like.
   
    0.440
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.