Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hoxb1aaHomeobox protein HoxB1ab. (318 aa)    
Predicted Functional Partners:
hoxd1aa
Homeobox protein HoxD1aa.
   
 0.920
pbx2
Pre-B-cell leukemia transcription factor 2.
    
 0.866
LOC106581981
pre-B-cell leukemia transcription factor 1-like.
    
 0.866
LOC106564206
pre-B-cell leukemia transcription factor 1-like.
    
 0.841
LOC106607421
pre-B-cell leukemia transcription factor 1-like isoform X1.
    
 0.841
LOC106600918
pre-B-cell leukemia transcription factor 1-like isoform X1.
    
 0.841
LOC106560332
pre-B-cell leukemia transcription factor 1 isoform X2.
    
 0.841
LOC106579892
pre-B-cell leukemia transcription factor 3-like isoform X10.
    
 0.841
LOC106584178
pre-B-cell leukemia transcription factor 1 isoform X1.
    
 0.841
LOC106599262
pre-B-cell leukemia transcription factor 1-like isoform X3.
    
 0.841
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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