Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpoCarboxypeptidase O isoform X2. (441 aa)    
Predicted Functional Partners:
agt
Angiotensinogen precursor; Belongs to the serpin family.
   
 
 0.828
cpn1
Carboxypeptidase N catalytic chain precursor.
   
 
 0.759
LOC106610943
XK-related protein.
      
 0.672
LOC106599729
XK-related protein.
      
 0.672
c5
Complement C5.
   
 0.668
c8g
Complement component C8 gamma chain precursor; Belongs to the calycin superfamily. Lipocalin family.
   
  
 0.639
serpind1
Heparin cofactor 2; Belongs to the serpin family.
   
 
 0.638
LOC106603687
Heparin cofactor 2-like; Belongs to the serpin family.
   
 
 0.638
antithrombin
Antithrombin protein precursor; Belongs to the serpin family.
   
 
 0.627
LOC106613587
antithrombin-III-like; Belongs to the serpin family.
   
 
 0.627
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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