STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab13Ras-related protein Rab-13. (199 aa)    
Predicted Functional Partners:
LOC106607233
MICAL-like protein 2.
    
 0.939
LOC106595394
MICAL-like protein 2 isoform X1.
    
 0.924
LOC106564136
MICAL-like protein 2.
    
 0.924
LOC106601118
MICAL-like protein 2 isoform X1.
    
 0.924
ENSSSAP00000000311
CAMP-dependent protein kinase catalytic subunit alpha-like.
     
 0.915
LOC106599750
cAMP-dependent protein kinase catalytic subunit beta-like isoform X2; Belongs to the protein kinase superfamily.
     
 0.915
LOC106606839
cAMP-dependent protein kinase catalytic subunit alpha isoform X1; Belongs to the protein kinase superfamily.
     
 0.915
prkacb
cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.
     
 0.915
LOC106569146
cAMP-dependent protein kinase catalytic subunit beta isoform X2; Belongs to the protein kinase superfamily.
     
 0.915
LOC106561819
Guanine nucleotide exchange factor for Rab-3A-like isoform X4.
    
 0.860
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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