STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106569367Heterogeneous nuclear ribonucleoprotein C-like isoform X1. (309 aa)    
Predicted Functional Partners:
if4a3
Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...]
   
 0.796
LOC106564785
Eukaryotic initiation factor 4A-III.
   
 0.796
LOC106583545
Serine/arginine-rich splicing factor 3-like.
   
 0.795
LOC106565658
Serine/arginine-rich splicing factor 3.
   
 0.795
LOC106565348
Serine/arginine-rich splicing factor 3-like.
   
 0.795
LOC106583084
Serine/arginine-rich splicing factor 3 isoform X1.
   
 0.795
dhx9
ATP-dependent RNA helicase A isoform X1.
   
 0.789
LOC106580094
Heterogeneous nuclear ribonucleoprotein K-like isoform X1.
   
 0.780
LOC106562047
Heterogeneous nuclear ribonucleoprotein K-like isoform X2.
   
 0.780
hnrnpk
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.780
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.