LOC106572132 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106572132

Multiple epidermal growth factor-like domains protein 6 isoform X3. (1470 aa)

Predicted Functional Partners:

LOC106572830

0.736

LOC106568560

0.736

LOC106569413

0.736

LOC106562116

0.717

LOC106605326

0.717

LOC106587207

0.717

wrap73

0.601

LOC106611731

0.590

LOC106604741

0.590

LOC106565756

0.576

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106562116	LOC106565756	ENSSSAP00000019499	ENSSSAP00000037683	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	Macrophage-stimulating protein receptor-like.	0.597
LOC106562116	LOC106568560	ENSSSAP00000019499	ENSSSAP00000093591	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	Transcription factor AP-1-like.	0.712
LOC106562116	LOC106569413	ENSSSAP00000019499	ENSSSAP00000099311	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	Transcription factor AP-1-like; Belongs to the bZIP family.	0.712
LOC106562116	LOC106572132	ENSSSAP00000019499	ENSSSAP00000012334	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	Multiple epidermal growth factor-like domains protein 6 isoform X3.	0.717
LOC106562116	LOC106572830	ENSSSAP00000019499	ENSSSAP00000047788	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	Transcription factor AP-1-like.	0.712
LOC106565756	LOC106562116	ENSSSAP00000037683	ENSSSAP00000019499	Macrophage-stimulating protein receptor-like.	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	0.597
LOC106565756	LOC106572132	ENSSSAP00000037683	ENSSSAP00000012334	Macrophage-stimulating protein receptor-like.	Multiple epidermal growth factor-like domains protein 6 isoform X3.	0.576
LOC106565756	LOC106587207	ENSSSAP00000037683	ENSSSAP00000096721	Macrophage-stimulating protein receptor-like.	semaphorin-7A-like; Belongs to the semaphorin family.	0.597
LOC106565756	LOC106605326	ENSSSAP00000037683	ENSSSAP00000021149	Macrophage-stimulating protein receptor-like.	semaphorin-7A-like; Belongs to the semaphorin family.	0.597
LOC106568560	LOC106562116	ENSSSAP00000093591	ENSSSAP00000019499	Transcription factor AP-1-like.	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	0.712
LOC106568560	LOC106569413	ENSSSAP00000093591	ENSSSAP00000099311	Transcription factor AP-1-like.	Transcription factor AP-1-like; Belongs to the bZIP family.	0.853
LOC106568560	LOC106572132	ENSSSAP00000093591	ENSSSAP00000012334	Transcription factor AP-1-like.	Multiple epidermal growth factor-like domains protein 6 isoform X3.	0.736
LOC106568560	LOC106587207	ENSSSAP00000093591	ENSSSAP00000096721	Transcription factor AP-1-like.	semaphorin-7A-like; Belongs to the semaphorin family.	0.712
LOC106568560	LOC106605326	ENSSSAP00000093591	ENSSSAP00000021149	Transcription factor AP-1-like.	semaphorin-7A-like; Belongs to the semaphorin family.	0.712
LOC106569413	LOC106562116	ENSSSAP00000099311	ENSSSAP00000019499	Transcription factor AP-1-like; Belongs to the bZIP family.	semaphorin-7A-like isoform X1; Belongs to the semaphorin family.	0.712
LOC106569413	LOC106568560	ENSSSAP00000099311	ENSSSAP00000093591	Transcription factor AP-1-like; Belongs to the bZIP family.	Transcription factor AP-1-like.	0.853
LOC106569413	LOC106572132	ENSSSAP00000099311	ENSSSAP00000012334	Transcription factor AP-1-like; Belongs to the bZIP family.	Multiple epidermal growth factor-like domains protein 6 isoform X3.	0.736
LOC106569413	LOC106572830	ENSSSAP00000099311	ENSSSAP00000047788	Transcription factor AP-1-like; Belongs to the bZIP family.	Transcription factor AP-1-like.	0.853
LOC106569413	LOC106587207	ENSSSAP00000099311	ENSSSAP00000096721	Transcription factor AP-1-like; Belongs to the bZIP family.	semaphorin-7A-like; Belongs to the semaphorin family.	0.712
LOC106569413	LOC106605326	ENSSSAP00000099311	ENSSSAP00000021149	Transcription factor AP-1-like; Belongs to the bZIP family.	semaphorin-7A-like; Belongs to the semaphorin family.	0.712