LOC106572048 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106572048

Uncharacterized protein LOC106572048. (1081 aa)

Predicted Functional Partners:

epm2a

0.946

gbe1

0.909

LOC106599117

0.821

LOC106568905

0.821

LOC106578509

0.821

LOC106601986

0.814

gys1

0.814

GYS2

0.814

ENSSSAP00000040078

0.790

LOC106579759

0.790

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000040078	GYS2	ENSSSAP00000040078	ENSSSAP00000078617	annotation not available	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.959
ENSSSAP00000040078	LOC106568905	ENSSSAP00000040078	ENSSSAP00000058076	annotation not available	Glycogen debranching enzyme-like isoform X1.	0.907
ENSSSAP00000040078	LOC106572048	ENSSSAP00000040078	ENSSSAP00000012353	annotation not available	Uncharacterized protein LOC106572048.	0.790
ENSSSAP00000040078	LOC106578509	ENSSSAP00000040078	ENSSSAP00000088643	annotation not available	Glycogen debranching enzyme-like isoform X1.	0.907
ENSSSAP00000040078	LOC106599117	ENSSSAP00000040078	ENSSSAP00000021668	annotation not available	Glycogen debranching enzyme-like isoform X2.	0.907
ENSSSAP00000040078	LOC106601986	ENSSSAP00000040078	ENSSSAP00000002066	annotation not available	Glycogen [starch] synthase, muscle-like.	0.959
ENSSSAP00000040078	gbe1	ENSSSAP00000040078	ENSSSAP00000014516	annotation not available	1,4-alpha-glucan-branching enzyme.	0.985
ENSSSAP00000040078	gys1	ENSSSAP00000040078	ENSSSAP00000036969	annotation not available	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.959
GYS2	ENSSSAP00000040078	ENSSSAP00000078617	ENSSSAP00000040078	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	annotation not available	0.959
GYS2	LOC106568905	ENSSSAP00000078617	ENSSSAP00000058076	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogen debranching enzyme-like isoform X1.	0.937
GYS2	LOC106572048	ENSSSAP00000078617	ENSSSAP00000012353	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Uncharacterized protein LOC106572048.	0.814
GYS2	LOC106578509	ENSSSAP00000078617	ENSSSAP00000088643	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogen debranching enzyme-like isoform X1.	0.937
GYS2	LOC106579759	ENSSSAP00000078617	ENSSSAP00000042145	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogenin-1-like.	0.959
GYS2	LOC106599117	ENSSSAP00000078617	ENSSSAP00000021668	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glycogen debranching enzyme-like isoform X2.	0.937
GYS2	epm2a	ENSSSAP00000078617	ENSSSAP00000007428	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Laforin.	0.719
GYS2	gbe1	ENSSSAP00000078617	ENSSSAP00000014516	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	1,4-alpha-glucan-branching enzyme.	0.997
LOC106568905	ENSSSAP00000040078	ENSSSAP00000058076	ENSSSAP00000040078	Glycogen debranching enzyme-like isoform X1.	annotation not available	0.907
LOC106568905	GYS2	ENSSSAP00000058076	ENSSSAP00000078617	Glycogen debranching enzyme-like isoform X1.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.937
LOC106568905	LOC106572048	ENSSSAP00000058076	ENSSSAP00000012353	Glycogen debranching enzyme-like isoform X1.	Uncharacterized protein LOC106572048.	0.821
LOC106568905	LOC106579759	ENSSSAP00000058076	ENSSSAP00000042145	Glycogen debranching enzyme-like isoform X1.	Glycogenin-1-like.	0.960