STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106575875Protein boule-like isoform X2. (348 aa)    
Predicted Functional Partners:
ENSSSAP00000068983
annotation not available
    
   0.782
LOC106578644
Ubiquitin-like modifier-activating enzyme 5.
    
   0.782
LOC106590118
Ubiquitin-like modifier-activating enzyme 5.
    
   0.782
cdc20b
Cell division cycle protein 20 homolog B isoform X1.
   
 
 0.765
cdc20
Cell division cycle protein 20 homolog isoform X1.
   
 
 0.765
LOC106569201
Cell division cycle protein 20 homolog.
   
 
 0.765
LOC106603492
CCR4-NOT transcription complex subunit 7 isoform X2.
    
 0.688
cnot8
CCR4-NOT transcription complex subunit 8.
    
 0.688
catsperb
Cation channel sperm-associated protein subunit beta isoform X1.
      
 0.664
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.618
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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