STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106572051Protein Shroom3-like isoform X9. (1967 aa)    
Predicted Functional Partners:
actr8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize (By similarity); Belongs to the actin family. ARP8 subfamily.
    
 0.740
dusp11
RNA/RNP complex-1-interacting phosphatase isoform X1.
     
 0.702
ENSSSAP00000040349
annotation not available
    
 0.681
acl6b
Actin-like protein 6B isoform X1; Belongs to the actin family.
   
 0.667
LOC106574142
Actin-like protein 6B; Belongs to the actin family.
   
 0.667
LOC106566696
Actin-related protein 5-like isoform X3.
    
 0.646
actr5
Actin-related protein 5; Belongs to the actin family.
    
 0.646
INO80C
INO80 complex subunit C.
    
 0.642
LOC106574865
INO80 complex subunit C-like.
    
 0.642
ruvb1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.637
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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