Elob protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

Elob

Elongin B. (128 aa)

Predicted Functional Partners:

CUL2

0.994

ENSSSAP00000039657

0.990

LOC106590672

0.990

rbx1

0.987

ENSSSAP00000071155

0.987

rbx1-2

0.987

cul2

0.980

RNF7

0.979

LOC106580882

0.979

RBX2

0.979

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL2	ENSSSAP00000039657	ENSSSAP00000022325	ENSSSAP00000039657	Cullin-2 isoform X1; Belongs to the cullin family.	annotation not available	0.997
CUL2	ENSSSAP00000071155	ENSSSAP00000022325	ENSSSAP00000071155	Cullin-2 isoform X1; Belongs to the cullin family.	annotation not available	0.994
CUL2	Elob	ENSSSAP00000022325	ENSSSAP00000012407	Cullin-2 isoform X1; Belongs to the cullin family.	Elongin B.	0.994
CUL2	LOC106580882	ENSSSAP00000022325	ENSSSAP00000076704	Cullin-2 isoform X1; Belongs to the cullin family.	RING-box protein 2.	0.950
CUL2	LOC106590672	ENSSSAP00000022325	ENSSSAP00000058538	Cullin-2 isoform X1; Belongs to the cullin family.	Transcription elongation factor B polypeptide 1 isoform X2; Belongs to the SKP1 family.	0.997
CUL2	RBX2	ENSSSAP00000022325	ENSSSAP00000083473	Cullin-2 isoform X1; Belongs to the cullin family.	RING-box protein 2.	0.950
CUL2	RNF7	ENSSSAP00000022325	ENSSSAP00000024642	Cullin-2 isoform X1; Belongs to the cullin family.	Ring finger protein 7.	0.950
CUL2	cul2	ENSSSAP00000022325	ENSSSAP00000114137	Cullin-2 isoform X1; Belongs to the cullin family.	Cullin 2.	0.896
CUL2	rbx1	ENSSSAP00000022325	ENSSSAP00000005050	Cullin-2 isoform X1; Belongs to the cullin family.	RING-box protein 1; E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase (CRLs) complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. CRLs complexes and arih1 collaborate in tandem to mediate ubiquitination of target proteins, arih1 mediating addition of the first ubiquitin on CRLs targets. The functional specificity of the E3 ubiquitin-protein ligase complexes d [...]	0.994
CUL2	rbx1-2	ENSSSAP00000022325	ENSSSAP00000081239	Cullin-2 isoform X1; Belongs to the cullin family.	Salmo salar ring-box 1 (rbx1), mRNA.	0.994
ENSSSAP00000039657	CUL2	ENSSSAP00000039657	ENSSSAP00000022325	annotation not available	Cullin-2 isoform X1; Belongs to the cullin family.	0.997
ENSSSAP00000039657	ENSSSAP00000071155	ENSSSAP00000039657	ENSSSAP00000071155	annotation not available	annotation not available	0.986
ENSSSAP00000039657	Elob	ENSSSAP00000039657	ENSSSAP00000012407	annotation not available	Elongin B.	0.990
ENSSSAP00000039657	LOC106580882	ENSSSAP00000039657	ENSSSAP00000076704	annotation not available	RING-box protein 2.	0.981
ENSSSAP00000039657	RBX2	ENSSSAP00000039657	ENSSSAP00000083473	annotation not available	RING-box protein 2.	0.981
ENSSSAP00000039657	RNF7	ENSSSAP00000039657	ENSSSAP00000024642	annotation not available	Ring finger protein 7.	0.981
ENSSSAP00000039657	cul2	ENSSSAP00000039657	ENSSSAP00000114137	annotation not available	Cullin 2.	0.989
ENSSSAP00000039657	rbx1	ENSSSAP00000039657	ENSSSAP00000005050	annotation not available	RING-box protein 1; E3 ubiquitin ligase component of multiple cullin-RING-based E3 ubiquitin-protein ligase (CRLs) complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins, including proteins involved in cell cycle progression, signal transduction, transcription and transcription-coupled nucleotide excision repair. CRLs complexes and arih1 collaborate in tandem to mediate ubiquitination of target proteins, arih1 mediating addition of the first ubiquitin on CRLs targets. The functional specificity of the E3 ubiquitin-protein ligase complexes d [...]	0.986
ENSSSAP00000039657	rbx1-2	ENSSSAP00000039657	ENSSSAP00000081239	annotation not available	Salmo salar ring-box 1 (rbx1), mRNA.	0.986
ENSSSAP00000071155	CUL2	ENSSSAP00000071155	ENSSSAP00000022325	annotation not available	Cullin-2 isoform X1; Belongs to the cullin family.	0.994