STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106579689V-set and transmembrane domain-containing protein 2A-like. (235 aa)    
Predicted Functional Partners:
sumf2
Sulfatase-modifying factor 2 isoform X1.
      
 0.592
LOC106573750
Membrane-bound transcription factor site-1 protease-like.
      
 0.572
LOC106560820
Membrane-bound transcription factor site-1 protease-like isoform X2.
      
 0.572
LOC106580091
N-alpha-acetyltransferase 35, NatC auxiliary subunit-like isoform X1.
      
 0.561
naa35
N-alpha-acetyltransferase 35, NatC auxiliary subunit isoform X2.
      
 0.561
pdyn
Beta-neoendorphin-dynorphin.
   
  
 0.542
LOC106590555
Protein transport protein Sec61 subunit gamma.
      
 0.530
sc61g
Protein transport protein Sec61 subunit gamma-like.
      
 0.530
sc61g-2
Transport protein Sec61 subunit gamma.
      
 0.530
LOC106606557
Relaxin-3-like.
      
 0.480
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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