Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
txnl4bThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)    
Predicted Functional Partners:
zmat2
Zinc finger matrin-type protein 2.
   
 0.976
LOC106600990
116 kDa U5 small nuclear ribonucleoprotein component.
    
 0.965
prpf6
pre-mRNA-processing factor 6.
    
 0.964
LOC100380699
pre-mRNA-processing-splicing factor 8.
    
 0.957
LOC106612861
pre-mRNA-processing-splicing factor 8-like.
    
 0.957
ruxg
Small nuclear ribonucleoprotein G.
   
 0.956
lsm2
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.945
prpf4
U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1.
    
 0.939
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.932
LOC106563485
U4/U6.U5 tri-snRNP-associated protein 1-like.
    
 0.931
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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