STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabggtbGeranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (355 aa)    
Predicted Functional Partners:
rabggta
Geranylgeranyl transferase type-2 subunit alpha isoform X1.
    
 0.999
LOC106602942
Rab proteins geranylgeranyltransferase component A 2-like isoform X1.
    
 0.995
PTAR1
Protein prenyltransferase alpha subunit repeat-containing protein 1-like isoform X2.
    
 0.994
ptar1
Protein prenyltransferase alpha subunit repeat-containing protein 1.
    
 0.994
YKT6
Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.
    
 
 0.904
YKT6-2
Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.
    
 
 0.904
LOC106568500
Synaptobrevin homolog YKT6-like; Belongs to the synaptobrevin family.
    
 
 0.904
LOC106585917
Ras-related protein ORAB-1-like.
    
 0.870
ENSSSAP00000030586
annotation not available
    
 0.870
ENSSSAP00000046921
annotation not available
    
 0.870
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.