STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rabggtbGeranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (355 aa)    
Predicted Functional Partners:
rabggta
Geranylgeranyl transferase type-2 subunit alpha isoform X1.
    
 0.999
LOC106602942
Rab proteins geranylgeranyltransferase component A 2-like isoform X1.
    
 0.997
PTAR1
Protein prenyltransferase alpha subunit repeat-containing protein 1-like isoform X2.
    
 0.990
ptar1
Protein prenyltransferase alpha subunit repeat-containing protein 1.
    
 0.990
tp4a1
Protein tyrosine phosphatase type IVA 1.
    
  0.951
tp4a2
Tyrosine phosphatase type IVA 2.
    
  0.951
LOC106588828
Protein tyrosine phosphatase type IVA 2.
    
  0.951
ENSSSAP00000063328
Protein tyrosine phosphatase 4A1.
    
  0.951
LOC106585917
Ras-related protein ORAB-1-like.
    
 0.911
ENSSSAP00000030586
annotation not available
    
 0.911
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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